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In-Silico Simulations

Overview

Our In-Silico Simulation Services provide advanced computational modeling and simulations to support research, drug discovery, environmental studies, and molecular biology. These simulations enable cost-effective, time-saving, and ethically sound alternatives to traditional wet-lab experiments by using high-performance computing and bioinformatics tools.


🧬 Core Services in In-Silico Analysis

🧪 Drug Discovery & Molecular Docking

  • Ligand-receptor interaction studies
  • Molecular docking of small molecules to target proteins
  • Binding affinity prediction and scoring
  • Virtual screening of drug libraries
  • Structure-based drug design (SBDD)

🔬 Molecular Dynamics (MD) Simulations

  • Protein-ligand complex stability
  • Conformational changes and protein folding
  • Solvation, temperature, and pressure effects
  • Analysis of trajectory data (RMSD, RMSF, H-bonds, etc.)

🧬 Bioinformatics & Genomic Simulations

  • Gene/protein structure prediction
  • Sequence alignment and phylogenetic analysis
  • Protein modeling (homology modeling, ab initio prediction)
  • SNP effect prediction and functional annotation

🌍 Environmental & Toxicological Modeling

  • Prediction of toxicity and ADMET properties
  • Environmental exposure modeling
  • QSAR (Quantitative Structure–Activity Relationship) studies
  • Computational ecotoxicology for chemicals and pollutants

🧫 Systems Biology & Network Simulations

  • Metabolic pathway modeling
  • Protein-protein interaction networks (PPI)
  • Simulation of gene regulatory networks
  • Cellular signal transduction modeling

⚙️ Tools & Platforms Used

  • AutoDock, PyRx, Schrödinger, MOE
  • GROMACS, NAMD for MD simulations
  • SwissADME, PROTOX-II, ADMETlab
  • BLAST, MEGA, Clustal Omega, Phyre2
  • Cytoscape, KEGG, STRING

🔒 Quality & Expertise

  • Services handled by trained computational biologists and bioinformaticians
  • Custom pipelines tailored to client or research needs
  • Confidentiality assured with NDA options for proprietary projects
  • Reports include visualizations, interpretations, and raw data

🧩 Applications

  • Pharmaceutical and nutraceutical research
  • Predictive toxicology and pharmacokinetics
  • Environmental risk assessments
  • Genomic annotation and evolutionary studies
  • Pre-clinical simulation of biological responses

📩 Contact Us

For collaboration, custom simulations, or consultation, please email us directly at:
👉 admin@hashimnexus.com.ng

Let’s help you accelerate your science with powerful computational insights.


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